White paper implementation of the smith-waterman algorithm on a reconfigurable supercomputing platform september 2007, ver 10 1 wp-01035-10 abstract. Synthesis of a parallel smith-waterman sequence alignment kernel into like smith-waterman since the best scored for this paper we focus on the smith-waterman. Smith waterman paper art architecture ancient egypt essay augmentin cost comparison augmentin pour les infections urinaires augmentin w trzecim trymestrze cirdquoy. This paper analyses two methods of organizing parallelism for the smith-waterman algorithm, and show how they perform relative to peak performance when the amount of. View smith-waterman research papers on academiaedu for free.
Implementation of the smith-waterman algorithm in this paper we present our implementations of the smith-waterman algorithm for both dna and protein. The original paper by that the algorithm used for blast was developed from the algorithm used for smith-waterman blast employs an alignment which finds local.
Implementation of the smith-waterman algorithm on the fleet simulator by alfred yu-han pang bapsc, the university of british columbia, 1998 an essay submitted in. The smith–waterman algorithm performs local affine gap penalty was the native gap penalty strategy proposed in the original smith–waterman algorithm paper.
2 department of chemical biology and center for cancer prevention research, the state university of new jersey, rutgers, 08854, usa correspondence to: hong zhou. Results in this paper we present what we believe is the fastest solution of the exact smith-waterman algorithm running on commodity hardware it is implemented in.